Index

_

__init__() (malva_client.models.CellExpressionMatrixResult method) (malva_client.models.CoexpressionResult method) (malva_client.models.CoverageResult method) (malva_client.models.MalvaDataFrame method) (malva_client.models.SearchResult method) (malva_client.models.SingleCellResult method) (malva_client.models.UMAPCoordinates method)

A

aggregate_by() (malva_client.models.MalvaDataFrame method) aggregate_by_sample() (malva_client.models.SingleCellResult method) AuthenticationError (class in malva_client.exceptions)

available_fields() (malva_client.models.MalvaDataFrame method) available_filter_fields() (malva_client.models.MalvaDataFrame method)

C

cell_count (malva_client.models.SingleCellResult property) cell_type_enrichment_to_dataframe() (malva_client.models.CoexpressionResult method) CellExpressionMatrixResult (class in malva_client.models) cells (malva_client.models.CellExpressionMatrixResult property) CoexpressionResult (class in malva_client.models)

Config (class in malva_client) (class in malva_client.config) ConfigurationError (class in malva_client.exceptions) CoverageResult (class in malva_client.models)

D

delete_config_file() (malva_client.Config method) (malva_client.config.Config method)

df (malva_client.models.MalvaDataFrame property) download_wig() (malva_client.models.CoverageResult method)

E

enrich_with_metadata() (malva_client.models.SearchResult method) (malva_client.models.SingleCellResult method)

F

features (malva_client.models.CellExpressionMatrixResult property) field_info() (malva_client.models.MalvaDataFrame method) filter_by() (malva_client.models.MalvaDataFrame method)

filter_by_expression() (malva_client.models.SingleCellResult method) filter_by_samples() (malva_client.models.SingleCellResult method) for_sample() (malva_client.models.CellExpressionMatrixResult method)

G

genes_to_dataframe() (malva_client.models.CoexpressionResult method) get_cell_ids() (malva_client.models.CellExpressionMatrixResult method) (malva_client.models.SingleCellResult method) get_expression_stats() (malva_client.models.SingleCellResult method) get_expression_values() (malva_client.models.SingleCellResult method) get_filter_options() (malva_client.models.CoverageResult method)

get_sample_ids() (malva_client.models.SingleCellResult method) get_top_expressing_cells() (malva_client.models.SingleCellResult method) get_top_genes() (malva_client.models.CoexpressionResult method) get_value() (malva_client.Config method) (malva_client.config.Config method) go_to_dataframe() (malva_client.models.CoexpressionResult method)

H

has_results (malva_client.models.SingleCellResult property)

I

is_completed (malva_client.models.SingleCellResult property)

is_pending (malva_client.models.SingleCellResult property)

J

job_id (malva_client.models.SearchResult property)

L

load() (malva_client.Config class method) (malva_client.config.Config class method)

M

malva_client module MalvaAPIError (class in malva_client.exceptions)

MalvaDataFrame (class in malva_client.models) matrix_entries (malva_client.models.CellExpressionMatrixResult property) module malva_client

N

NetworkError (class in malva_client.exceptions)

normalization_factors (malva_client.models.CellExpressionMatrixResult property)

P

plot() (malva_client.models.CoverageResult method) (malva_client.models.UMAPCoordinates method) plot_expression_by() (malva_client.models.MalvaDataFrame method) plot_expression_summary() (malva_client.models.MalvaDataFrame method)

plot_go_enrichment() (malva_client.models.CoexpressionResult method) plot_top_genes() (malva_client.models.CoexpressionResult method) plot_umap() (malva_client.models.CoexpressionResult method) positive_cells() (malva_client.models.CellExpressionMatrixResult method) project() (malva_client.models.CellExpressionMatrixResult method)

Q

query_gene (malva_client.models.SingleCellResult property)

QuotaExceededError (class in malva_client.exceptions)

R

reset_to_defaults() (malva_client.Config method) (malva_client.config.Config method)

results (malva_client.models.SearchResult property)

S

sample_count (malva_client.models.SingleCellResult property) sample_metadata (malva_client.models.CellExpressionMatrixResult property) save() (malva_client.Config method) (malva_client.config.Config method) save_to_csv() (malva_client.models.SingleCellResult method) scores_to_dataframe() (malva_client.models.CoexpressionResult method) SearchError (class in malva_client.exceptions)

SearchResult (class in malva_client.models) set_value() (malva_client.Config method) (malva_client.config.Config method) show() (malva_client.Config method) (malva_client.config.Config method) SingleCellResult (class in malva_client.models) status (malva_client.models.SearchResult property) StorageError (class in malva_client.exceptions)

T

TimeoutError (class in malva_client.exceptions) tissue_breakdown_to_dataframe() (malva_client.models.CoexpressionResult method) to_dataframe() (malva_client.models.CellExpressionMatrixResult method) (malva_client.models.CoverageResult method) (malva_client.models.SingleCellResult method) (malva_client.models.UMAPCoordinates method)

to_pandas() (malva_client.models.MalvaDataFrame method) to_single_cell_result() (malva_client.models.CellExpressionMatrixResult method) total_cells (malva_client.models.SearchResult property)

U

umap_to_dataframe() (malva_client.models.CoexpressionResult method)

UMAPCoordinates (class in malva_client.models) unique_values() (malva_client.models.MalvaDataFrame method)

V

validate() (malva_client.Config method) (malva_client.config.Config method)

ValidationError (class in malva_client.exceptions) value_counts() (malva_client.models.MalvaDataFrame method)